Tools.mygene.MyGene
Import a csv of refseq accessions & get gene information from mygene.
Usage
Tools.mygene.MyGene(
infile,
outfile,
)Methods
| Name | Description |
|---|---|
| __init__() | Initialize my gene handle and refseq/accessions list. |
| query_mygene() | Query mygene for gene information. |
__init__()
Initialize my gene handle and refseq/accessions list.
Usage
__init__(infile, outfile)Get the basic gene information. It’s best to use a csv file and title the row of the accessions list Accessions.
Parameters
infile-
Input a csv file with a
Homo_sapienscolumn outfile- Desired path & name of the output file.
query_mygene()
Query mygene for gene information.
Usage
query_mygene()