## Orthologs.Blast.OrthoBlastN


OrthoBlastN provides a preconfigured and orthology optimized version


Usage

``` python
Orthologs.Blast.OrthoBlastN(
    project="orthology-gpcr",
    project_path=os.getcwd(),
    method=1,
    template=None,
    save_data=True,
    acc_file="gpcr.csv",
    copy_from_package=True,
    auto_start=False,
    **kwargs
)
```


of the BaseBlastN class.


## Methods

| Name | Description |
|----|----|
| [__init__()](#__init__) | This class inherits from the BaseBlastN class. |
| [run()](#run) | Run the blast using a default configuration. |

------------------------------------------------------------------------


#### \_\_init\_\_()


This class inherits from the BaseBlastN class.


Usage

``` python
__init__(
    project="orthology-gpcr",
    project_path=os.getcwd(),
    method=1,
    template=None,
    save_data=True,
    acc_file="gpcr.csv",
    copy_from_package=True,
    auto_start=False,
    **kwargs
)
```


This class utilizes it's parent classes to search a standalone Blast database for specific orthologs of a gene using a query organism (usually human). The best hits from the Blast are filtered for the best option in order to get the most accuarate accession numbers for downstream analysis.


##### Parameters


`project=``"orthology-gpcr"`  
The project name (Default: 'orthology-gpcr')

`project_path=os.getcwd()`  
The path of the project (Default: 'os.getcwd()')

`method=``1`  
Method used for blasting. (Default: 1)

`template=None`  
The accession file template.

`save_data=``True`  
A flag for saving the post_blast data to an excel file.

`acc_file=``"gpcr.csv"`  
The accession file to use. (Default: 'gpcr.csv')

`copy_from_package=``True`  
Copy the acc_file from the package. (Default: True)

`kwargs={}`  


------------------------------------------------------------------------


#### run()


Run the blast using a default configuration.


Usage

``` python
run()
```